PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim02g080730.0.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family G2-like
Protein Properties Length: 270aa    MW: 30691.4 Da    PI: 10.3417
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim02g080730.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.65e-322578255
             G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                        prlrWt +LH+rFv+av++LGG ++AtPk +l++m+vkg+t++h+kSHLQ+YR+
  Sopim02g080730.0.1 25 PRLRWTDDLHRRFVHAVDHLGGVDRATPKMVLQIMNVKGVTISHIKSHLQMYRS 78
                        8****************************************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.5182181IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-302279IPR009057Homeodomain-like
SuperFamilySSF466896.81E-162379IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-242578IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MELGNNNSDK SSEFFIRAYV KPKMPRLRWT DDLHRRFVHA VDHLGGVDRA TPKMVLQIMN  60
VKGVTISHIK SHLQMYRSLK HQEMQAEAAN GRKRNRIDAS DSMNNLWANL VHRYNHINGK  120
AAVIDGSDQM NFPQGNLVNG YNHIKGKAAM FDGSNQMNFP QGNLIHCYNH NNRKAPIFNG  180
SNQMNISQGN LVHCYNHNNG KAPIINGSNQ MNFPQGNLVQ RYNHNNGKSV FDGHLNPTVT  240
TNYLEKIASS STVFPPPWFV SFFFSSFFLX
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010317313.10.0PREDICTED: uncharacterized protein LOC104646024
TrEMBLK4B9U40.0K4B9U4_SOLLC; Uncharacterized protein
STRINGSolyc02g080730.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13843412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.19e-28G2-like family protein